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50% Off for 6 Months Buy Now & Save
Best e-commerce accounting software
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Automate sales tracking from online platforms
FreshBooks accounting software automates sales tracking from multiple sales channels, saving e-commerce businesses time and reducing the risk of errors. This automation helps businesses monitor their revenue and sales performance across all channels in one place.
Manage inventory and expenses efficiently
FreshBooks helps e-commerce businesses efficiently manage their inventory and expenses. It provides tools to track stock levels, monitor expenses, and manage profitability, ensuring businesses have a clear view of their financial standing.
Additionally, FreshBooks offers insights into business performance, helping businesses monitor and enhance their inventory management and sales across various platforms.
Simplify tax calculations and compliance
E-commerce bookkeeping is a crucial component of managing an online business's financial operations, and FreshBooks simplifies sales tax calculations and compliance for e-commerce businesses. The software automates tax calculations, helping businesses stay compliant with tax laws and regulations and reducing the complexity of tax management.
Generate detailed sales and financial reports
FreshBooks enables e-commerce businesses to generate detailed sales and financial reports by integrating various sales channels. These accurate reports offer insights into sales trends, expenses, and overall financial health, supporting informed decision-making and strategic planning.
Improve cash flow with automated invoicing
FreshBooks improves cash flow for e-commerce businesses with automated invoicing. The software automates invoicing processes, helps reduce payment delays, and streamlines financial transactions.
Manage inventory and expenses efficiently
FreshBooks helps e-commerce businesses efficiently manage their inventory and expenses. It provides tools to track stock levels, monitor expenses, and manage profitability, ensuring businesses have a clear view of their financial standing.
Additionally, FreshBooks offers insights into business performance, helping businesses monitor and enhance their inventory management and sales across various platforms.
E-commerce accounting software with all the features you need
Invoicing
Create professional invoices in minutes. Automatically add tracked time and expenses, calculate taxes, and customize your payment options.
Billing and Payments
Bill fast, get paid even faster, and automate the rest with recurring invoices, online payments, and late payment reminders.
Expenses
Keep track of your expenses with mobile receipt scanning, bank account imports, and automated expense categorization.
Payroll
The simplest way to pay yourself and your team. Seamlessly run payroll, track expenses, and calculate taxes without juggling separate tools.
Automate your e-commerce finances and save time
Faster payments and streamlined invoicing for online sales
Get real-time insights into your e-commerce business’s financial performance
Automate your e-commerce finances and save time
Faster payments and streamlined invoicing for online sales
Get real-time insights into your e-commerce business’s financial performance
Automate your e-commerce finances and save time
Faster payments and streamlined invoicing for online sales
Get real-time insights into your e-commerce business’s financial performance
Free vs. FreshBooks accounting software for e-commerce businesses
Free accounting software might seem like a good starting point for e-commerce businesses, but it often lacks important features. Things like detailed sales tracking, inventory management, and tax calculations can be limited or missing. This can make it hard to keep accurate records and understand your business's financial health.
FreshBooks offers a strong alternative. It’s designed for e-commerce, with features to automate sales tracking from multiple channels, manage inventory, and simplify tax compliance. FreshBooks also integrates with other e-commerce tools and payment providers, creating a smooth workflow and giving you a clear view of your finances. In addition to these features, FreshBooks provides secure data storage and customer support to help you manage your finances and grow your business.
Why e-commerce businesses choose FreshBooks:
The reviews say it all.
4.5 Outstanding
FreshBooks offers a well-rounded, intuitive, and attractive double-entry accounting experience. It anticipates the needs of freelancers and small businesses well—better than competitors in this class.
4.5 Excellent
FreshBooks automates daily accounting activities namely invoice creation, payment acceptance, expenses tracking, billable time tracking, and financial reporting.
4.5 Excellent
FreshBooks is an online accounting and invoicing service that saves you time and makes you look professional – Fortune 500 professional.
4.7 Excellent
FreshBooks makes it easy to stay organized, keep track of payments owed and expenses made, send invoices and accept payments.
4.5 Outstanding
FreshBooks offers a well-rounded, intuitive, and attractive double-entry accounting experience. It anticipates the needs of freelancers and small businesses well—better than competitors in this class.
100+ apps.
Accounting apps and integrations for e-commerce business
FreshBooks integrates with 100+ apps, helping you take control of your e-commerce business’s accounting and customize your FreshBooks workflows.
See All Apps
Support that actually supports you 
Help From Start to Finish
Our Support team is knowledgeable and never transfers you to other departments.
4.8/5.0 Star Reviews
Yup, that’s our Support team approval rating across 120,000+ reviews
Global Support
We’ve got over 100 Support staff working across North America
Help From Start to Finish
Our Support team is knowledgeable and never transfers you to other departments.
Accounting software
by industry
Feeling overwhelmed by bookkeeping? FreshBooks offers industry-specific accounting software that simplifies finances and boosts efficiency, letting you focus on what truly matters. Visit our industry pages below to learn how FreshBooks can fulfill all your accounting needs!
Resources to support e-commerce businesses
Ecommerce Bookkeeping: The Small Business Guide
How Much Does It Cost to Start an Online Business in 2025
How To Sell Products Online? An Extensive Guide
Frequently Asked Questions
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